منابع مشابه
Regulatory Sequence Analysis Tools
The web resource Regulatory Sequence Analysis Tools (RSAT) (http://rsat.ulb.ac.be/rsat) offers a collection of software tools dedicated to the prediction of regulatory sites in non-coding DNA sequences. These tools include sequence retrieval, pattern discovery, pattern matching, genome-scale pattern matching, feature-map drawing, random sequence generation and other utilities. Alternative forma...
متن کاملRSAT: regulatory sequence analysis tools
The regulatory sequence analysis tools (RSAT, http://rsat.ulb.ac.be/rsat/) is a software suite that integrates a wide collection of modular tools for the detection of cis-regulatory elements in genome sequences. The suite includes programs for sequence retrieval, pattern discovery, phylogenetic footprint detection, pattern matching, genome scanning and feature map drawing. Random controls can b...
متن کاملRSAT 2015: Regulatory Sequence Analysis Tools
RSAT (Regulatory Sequence Analysis Tools) is a modular software suite for the analysis of cis-regulatory elements in genome sequences. Its main applications are (i) motif discovery, appropriate to genome-wide data sets like ChIP-seq, (ii) transcription factor binding motif analysis (quality assessment, comparisons and clustering), (iii) comparative genomics and (iv) analysis of regulatory varia...
متن کاملNew tools, resources for gene regulatory analysis in Drosophila.
Correspondence to: Marc S. Halfon; Department of Biochemistry; Center of Excellence in Bioinformatics; State University of New York at Buffalo; 140 Farber Hall, 3435 Main Street; Buffalo, New York 14214-3000 USA; Tel.: 716.829.8126; Fax: 716.829.2725; Email: [email protected]/ David N. Arnosti; Department of Biochemistry and Molecular Biology; Michigan State University; East Lansing, Michiga...
متن کاملoPOSSUM: integrated tools for analysis of regulatory motif over-representation
The identification of over-represented transcription factor binding sites from sets of co-expressed genes provides insights into the mechanisms of regulation for diverse biological contexts. oPOSSUM, an internet-based system for such studies of regulation, has been improved and expanded in this new release. New features include a worm-specific version for investigating binding sites conserved b...
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ژورنال
عنوان ژورنال: Nucleic Acids Research
سال: 2003
ISSN: 1362-4962
DOI: 10.1093/nar/gkg567